KREUZADER (Posts tagged biology)

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See, that’s what the app is perfect for.

Sounds perfect Wahhhh, I don’t wanna

Scientists working throughout the world have identified 80 unique “codas,” the sperm whale equivalent of words, which they produce by emitting sounds called clicks. Each sperm whale clan has its own dialect, a unique repertoire of codas shared only with the other families who make up their clan. In the Pacific, there are five known dialect clans, and many of them co-exist in the same general regions without ever interacting. Atlantic whales have their own dialects too, and in the Caribbean there are two known clans.

sperm whales whales linguistics biology

[…] subsurface metal eaters may provide a blueprint for life on other worlds, where alien microbes might be hidden beneath the planet’s shallow exterior. “For me, one of the most exciting possibilities is finding life-forms that might survive in extreme environments like Mars,” said El-Naggar, whose gold mine experiment is funded by NASA’s Astrobiology Institute. Mars, for example, is iron-rich and has water flowing beneath its surface. “If you have a system that can pick up electrons from iron and have some water, then you have all the ingredients for a conceivable metabolism,” said El-Naggar. Perhaps a former mine a mile underneath South Dakota won’t be the most surprising place that researchers find electron-eating life.

biology exobiology

Venter is careful to avoid calling syn3.0 a universal minimal cell. If he had done the same set of experiments with a different microbe, he points out, he would have ended up with a different set of genes.

In fact, there’s no single set of genes that all living things need in order to exist. When scientists first began searching for such a thing 20 years ago, they hoped that simply comparing the genome sequences from a bunch of different species would reveal an essential core shared by all species. But as the number of genome sequences blossomed, that essential core disappeared. In 2010, David Ussery, a biologist at Oak Ridge National Laboratory in Tennessee, and his collaborators compared 1,000 genomes. They found that not a single gene is shared across all of life. “There are different ways to have a core set of instructions,” Szostak said.

biology genetics

Using reprogrammed iPS cells, scientists from the RIKEN Center for Developmental Biology (CDB) in Japan have, along with collaborators from Tokyo University of Science and other Japanese institutions, successfully grown complex skin tissue—complete with hair follicles and sebaceous glands—in the laboratory. They were then able to implant these three-dimensional tissues into living mice, and the tissues formed proper connections with other organ systems such as nerves and muscle fibers. This work opens a path to creating functional skin transplants for burn and other patients who require new skin. 

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biology

So lookee here (or here, for popsci coverage). Researchers out of the University of Virginia have successfully controlled behavior in mice— possibly instilled True Happiness, although it’s impossible to be sure about another being’s inner emotional state— using controlled magnetic fields. By hacking into the reward centers of the rodent brain they induced the little guys to assemble on command, drew them to any spot where critical lines of force brought down the rapture. (It’s a little like the “wirehead” tech that Louis Wu became addicted to in Larry Niven’s Ringworld books. Only wireless.) Faster than drugs, deeper than optogenetics, more precise than that run-of-the-mill transcranial magnetic stimulation that induces night terrors and “sensed presence”, the new technique represents “the first demonstration of bona fide magnetic control of the nervous system.”

[…]

One line in particular jumped out at me while reading Wheeler et al: their description of Magneto2.0 as “a prototype for a class of magnetogenetic remote controlled actuators.” They targeted the striatum— a central element of the brain’s reward system— but they could have just as easily gone after the motor strip, provoked a case of alien-paw syndrome instead of a dopamine high. A few years down the road, they might be able to run the motor systems of those mice as easily as the LAPD runs other people’s self-driving 2022 Teslas.

[…]

Evildoers fly to their targets, so we keep them from flying. If they ride overland to their targets we take control of their vehicles, keep them from riding; it’s the same thing. If they walk to their targets— if they disobey a lawful command, try to run— well, how can we stop suspected terrorists from driving, yet draw the line at arms and legs?

Police have always had the right to immobilize suspects, tackle them physically, restrain them. For the good of society.

It’s the same thing, right?

William Gibson was right. The street finds its own uses for things.

Of course, so does the state.

It would not behoove us to forget that.

biology dystopia
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The current outbreak of Zika virus (ZIKV) infection has been associated with an apparent increased risk of congenital microcephaly. We describe a case of a pregnant woman and her fetus infected with ZIKV during the 11th gestational week. The fetal head circumference decreased from the 47th percentile to the 24th percentile between 16 and 20 weeks of gestation. ZIKV RNA was identified in maternal serum at 16 and 21 weeks of gestation. At 19 and 20 weeks of gestation, substantial brain abnormalities were detected on ultrasonography and magnetic resonance imaging (MRI) without the presence of microcephaly or intracranial calcifications. On postmortem analysis of the fetal brain, diffuse cerebral cortical thinning, high ZIKV RNA loads, and viral particles were detected, and ZIKV was subsequently isolated.

short version: the virus seems to destroy fetal brain tissue in some cases even without the obvious indicator of a deformed cranium

biology zika virus medicine

Whole-genome design and synthesis were used to minimize the 1079–kilobase pair (kbp) synthetic genome of M. mycoides JCVI-syn1.0.  An initial design, based on collective knowledge of molecular biology in combination with limited transposon mutagenesis data, failed to produce a viable cell. Improved transposon mutagenesis methods revealed a class of quasi-essential genes that are needed for robust growth, explaining the failure of our initial design. Three more cycles of design, synthesis, and testing, with retention of quasi-essential genes, produced JCVI-syn3.0 (531 kbp, 473 genes). Its genome is smaller than that of any autonomously replicating cell found in nature. JCVI-syn3.0 has a doubling time of ~180 min, produces colonies that are morphologically similar to those of JCVI-syn1.0, and appears to be polymorphic when examined microscopically.

The minimal cell concept appears simple at first glance but becomes more complex upon close inspection. In addition to essential and nonessential genes, there are many quasi-essential genes, which are not absolutely critical for viability but are nevertheless required for robust growth. Consequently, during the process of genome minimization, there is a trade-off between genome size and growth rate. JCVI-syn3.0 is a working approximation of a minimal cellular genome, a compromise between small genome size and a workable growth rate for an experimental organism. It retains almost all the genes that are involved in the synthesis and processing of macromolecules. Unexpectedly, it also contains 149 genes with unknown biological functions, suggesting the presence of undiscovered functions that are essential for life.

biology cellular biology genetics genetic engineering
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Massachusetts General Hospital (MGH) researchers have taken some initial steps toward the creation of bioengineered human hearts using donor hearts stripped of components that would generate an immune response and cardiac muscle cells generated from induced pluripotent stem cells (iPSCs), which could come from a potential recipient. 

medicine biology

The eukaryotes are a sophisticated bunch. In their ranks, one finds multi-cellular organisms like animals, plants, and fungi. Even the uni-cellular eukaryotes, such as amoebas and yeast, have an intracellular complexity that far exceeds the simple machinery inside prokaryotes, classified as the “non-eukaryotes.” Biologists have been debating the origin of eukaryotic complexity for decades, but a study published last year of deep ocean deposits may have uncovered an evolutionary clue within a prokaryote.

In a sample taken from the Arctic Ocean, researchers have identified a microbial organism belonging to the domain of Archaea. What sets this prokaryote apart is that it has genetic markers that put it closer to eukaryotes than any other prokaryote studied before. Moreover, this organism, which has been named Lokiarchaea, appears to have genes that are typically associated with eukaryotic functions, such as membrane remodeling capabilities.

This finding fits into a theory that eukaryotes evolved from an archaeal ancestor, making Lokiarchaeota a kind of “missing link” in the universal tree of life.

biology nasa evolution
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A DARPA-funded research team has created a novel neural-recording device that can be implanted into the brain through blood vessels, eliminating the need for invasive surgery and the risks associated with breaching the blood-brain barrier. The technology was developed under DARPA’s Reliable Neural-Interface Technology (RE-NET) program, and offers new potential for safely expanding the use of brain-machine interfaces (BMIs) to treat physical disabilities and neurological disorders.  

In an article published in Nature Biotechnology, researchers in the Vascular Bionics Laboratory at the University of Melbourne led by neurologist Thomas Oxley, M.D., describe proof-of-concept results from a study conducted in sheep that demonstrate high-fidelity measurements taken from the motor cortex—the region of the brain responsible for controlling voluntary movement—using a novel device the size of a small paperclip.

biology neuroscience